loadScript /js/jsmol/j2s/core/package.js
loadScript /js/jsmol/j2s/core/corejmol.z.js
JSmol exec jmolApplet start applet null
Jmol JavaScript applet jmolApplet__52708404117303__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet__52708404117303__)
vwrOptions:
{ "name":"jmolApplet","applet":true,"documentBase":"https://pdb101.rcsb.org/learn/structural-biology-highlights/alphabeta-barrels","platform":"J.awtjs2d.Platform","fullName":"jmolApplet__52708404117303__","codePath":"https:/js/jsmol/j2s/","display":"jmolApplet_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"52708404117303","bgcolor":"#FFFFFF" }
setting document base to "https://pdb101.rcsb.org/learn/structural-biology-highlights/alphabeta-barrels"
(C) 2015 Jmol Development
Jmol Version: 14.7.0_2016.06.27 2016-06-27 01:32
java.vendor: Java2Script (HTML5)
java.version: 2016-05-08 13:20:27 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet (signed)
loadScript /js/jsmol/j2s/core/corescript.z.js
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet__52708404117303__ ready
script 1 started
antialiasDisplay = true
0 FM /pdb/learn/structural-biology-highlights/1vkf.pdb
1 FM /pdb/learn/structural-biology-highlights/1vrd.alignment.pdb.txt
2 FM /pdb/learn/structural-biology-highlights/1vpx.alignment.pdb.txt
3 FM /pdb/learn/structural-biology-highlights/1zy9.alignment.pdb.txt
4 FM /pdb/learn/structural-biology-highlights/1o0y.alignment.pdb.txt
5 FM /pdb/learn/structural-biology-highlights/1j5s.alignment.pdb.txt
loadScript /js/jsmol/j2s/J/io/FilesReader.js
loadScript /js/jsmol/j2s/J/api/JmolFilesReaderInterface.js
loadScript /js/jsmol/j2s/java/util/zip/ZipInputStream.js
loadScript /js/jsmol/j2s/java/util/zip/InflaterInputStream.js
loadScript /js/jsmol/j2s/JU/InflaterInputStream.js
loadScript /js/jsmol/j2s/java/util/zip/ZipConstants.js
loadScript /js/jsmol/j2s/java/util/zip/CRC32.js
loadScript /js/jsmol/j2s/JU/CRC32.js
loadScript /js/jsmol/j2s/JU/Checksum.js
loadScript /js/jsmol/j2s/core/corebinary.z.js
loadScript /js/jsmol/j2s/java/util/zip/Inflater.js
loadScript /js/jsmol/j2s/JU/Inflater.js
loadScript /js/jsmol/j2s/JU/ZStream.js
loadScript /js/jsmol/j2s/JU/Adler32.js
loadScript /js/jsmol/j2s/JU/Inflate.js
loadScript /js/jsmol/j2s/JU/GZIPHeader.js
loadScript /js/jsmol/j2s/JU/InfBlocks.js
loadScript /js/jsmol/j2s/JU/InfTree.js
loadScript /js/jsmol/j2s/JU/InfCodes.js
loadScript /js/jsmol/j2s/java/util/zip/ZipEntry.js
loadScript /js/jsmol/j2s/java/util/zip/ZipException.js
FileManager opening url https://pdb101.rcsb.org/pdb/learn/structural-biology-highlights/1vkf.pdb
The Resolver thinks Pdb
loadScript /js/jsmol/j2s/core/corebio.z.js
FileManager opening url https://pdb101.rcsb.org/pdb/learn/structural-biology-highlights/1vrd.alignment.pdb.txt
The Resolver thinks Pdb
FileManager opening url https://pdb101.rcsb.org/pdb/learn/structural-biology-highlights/1vpx.alignment.pdb.txt
The Resolver thinks Pdb
FileManager opening url https://pdb101.rcsb.org/pdb/learn/structural-biology-highlights/1zy9.alignment.pdb.txt
The Resolver thinks Pdb
FileManager opening url https://pdb101.rcsb.org/pdb/learn/structural-biology-highlights/1o0y.alignment.pdb.txt
The Resolver thinks Pdb
FileManager opening url https://pdb101.rcsb.org/pdb/learn/structural-biology-highlights/1j5s.alignment.pdb.txt
The Resolver thinks Pdb
openFiles(6) 927 ms
reading 15219 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
6 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
model 4.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
15219 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 14.7.0_2016.06.27 2016-06-27 01:32 DSSP analysis for model 1.1 - null
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer in Java for our purposes.
Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.
All bioshapes have been deleted and must be regenerated.
Note: This model contains alternative locations. Use 'CONFIGURATION 1' to be consistent with CMBI DSSP.
Jmol 14.7.0_2016.06.27 2016-06-27 01:32 DSSP analysis for model 2.1 - null
Jmol 14.7.0_2016.06.27 2016-06-27 01:32 DSSP analysis for model 3.1 - null
Jmol 14.7.0_2016.06.27 2016-06-27 01:32 DSSP analysis for model 4.1 - null
Note: This model contains alternative locations. Use 'CONFIGURATION 1' to be consistent with CMBI DSSP.
Jmol 14.7.0_2016.06.27 2016-06-27 01:32 DSSP analysis for model 5.1 - null
Jmol 14.7.0_2016.06.27 2016-06-27 01:32 DSSP analysis for model 6.1 - null
Time for creating model: 437 ms
6 models
15219 atoms selected
1334 atoms selected
Script completed
Jmol script terminated
loadScript /js/jsmol/j2s/J/g3d/HermiteRenderer.js