Molecule of the Month: Hantavirus

Family of rodent-borne viruses that can cause severe illness in humans

Hantavirus envelope glycoproteins, from pdb_00009p3x and pdb_00006zjm. Gn, shown in orange, and Gc, shown in salmon, arrange in tetrameric square-like tiles on the surface of the viral membrane (shown in gray).
Hantavirus envelope glycoproteins, from pdb_00009p3x and pdb_00006zjm. Gn, shown in orange, and Gc, shown in salmon, arrange in tetrameric square-like tiles on the surface of the viral membrane (shown in gray).
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A hantavirus outbreak linked to a cruise ship has recently put the spotlight on this zoonotic virus. Globally, it is estimated that tens of thousands of hantavirus infections occur each year. People most commonly become infected by inhaling dust contaminated with the urine, feces, or saliva of infected rodents. Although hantaviruses typically do not cause noticeable illness in the rodents that carry them, in humans infection can trigger serious disease. Different hantaviruses are associated with different forms of illness depending on where they are found in the world. New World hantaviruses, which are found in the Americas, can cause hantavirus pulmonary syndrome, a severe respiratory disease that can rapidly become fatal. In Europe and Asia, Old World hantaviruses are more commonly associated with hemorrhagic fever with renal syndrome, a disease that affects blood vessels and kidney function. In the few documented cases where person-to-person transmission are thought to have occurred, infections were linked to a specific New World hantavirus known as the Andes virus, and appeared to require close personal contact between individuals.

Viral structure

Hantaviruses are membrane-enveloped RNA viruses that vary in shape and size. Although hantaviruses often appear roughly spherical under the microscope, some particles are elongated or tubular. The viral genome consists of three segments of single-stranded RNA, referred to as the small (S), medium (M), and large (L) segments. Each segment encodes different viral components essential for infection and replication. The small segment encodes the nucleocapsid protein, which binds and protects the viral RNA. The medium segment encodes two envelope glycoproteins, called Gn and Gc, which protrude from the viral surface. The large segment encodes an RNA-dependent RNA polymerase, the enzyme responsible for transcribing and copying the viral genome.

The surface of the viral membrane is covered with Gn/Gc protein complexes that assemble into square-shaped tetrameric complexes. These tile-like complexes organize into a characteristic square lattice across the viral surface, illustrated on the right (pdb_00009p3x and pdb_00006zjm). Inside the virus, the tails of the glycoproteins interact with nucleocapsid proteins and viral RNA that form rod-shaped ribonucleoprotein complexes that package the genome.

A pan-hantavirus neutralizing antibody, called ADI-65534 (blue) binds to the interface between Gc and Gn envelope proteins (pdb_00009p3y and pdb_00007qqb). Only the antigen-binding region of the antibody is shown in this structure, and the transmembrane domains of the envelope proteins are not shown.
A pan-hantavirus neutralizing antibody, called ADI-65534 (blue) binds to the interface between Gc and Gn envelope proteins (pdb_00009p3y and pdb_00007qqb). Only the antigen-binding region of the antibody is shown in this structure, and the transmembrane domains of the envelope proteins are not shown.
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Protecting against hantavirus

To infect a cell, hantavirus surface spikes bind to proteins on the surface of target cells, including cells that line blood vessels and the respiratory tract. Once attached and internalized into cells, the viral spikes undergo a dramatic structural rearrangement that allows the viral membrane to fuse with the host cell membrane. This fusion event releases the viral genome into the cell, initiating infection. As the immune system responds to infection, the body produces different antibodies that recognize the virus. Some of these antibodies are “neutralizing antibodies,” meaning that they can block the virus from replicating and spreading. Researchers have isolated neutralizing antibodies from individuals who have recovered from hantavirus infections. While most of these antibodies recognize only a single hantavirus, scientists have also discovered broadly neutralizing antibodies capable of blocking multiple hantaviruses.

One such antibody, called ADI-42898, was isolated from a patient infected with Puumala virus, an Old World hantavirus found primarily in Europe and Russia. Structural studies revealed that the antibody binds at the interface between the Gn and Gc proteins, locking the viral spikes into a prefusion state and preventing the virus from entering cells. Importantly, ADI-42898 was shown to protect against a wide range of both Old World and New World hantaviruses. Researchers later engineered an optimized version of the antibody, called ADI-65534, with even broader blocking activity, including improved activity against the Andes virus. Research into how antibodies recognize and block infection can lead to new therapeutics against hantaviruses, for which no FDA-approved treatment or vaccine are currently available.

Exploring the Structure

Comparing prefusion and postfusion structures

Although hantavirus spike proteins arrange in a characteristic square lattice, they rearrange during cellular infection. The Gc envelope proteins (shown in pink) form trimeric spikes on the viral membrane surface that undergo a conformational change that results in the fusion of the viral and cell membranes. This mechanism is similar to how other viruses, such as HIV and dengue, infect cells. Click on the jsMol tab to compare the structure of the Gc/Gn prefusion tetramer from Andes virus (pdb_00006p3x) with a postfusion Gc trimer from Puumala virus (pdb_00005j81).

Topics for Further Discussion

  1. Learn more about broadly neutralizing antibodies that target HIV and influenza.
  2. The fusion mechanism that hantaviruses use to infect cells is similar to how other viruses, including HIV and dengue, infect cells. Read more about the envelope proteins of HIV and dengue.

References

  1. pdb_00009p3x, pdb_00009p3y: Guo L, McFadden E, Slough MM, Stone ET, Berrigan J, Mittler E, Hatzakis K, Hinkley T, Kain HS, Ke Z, Warner NL, Erasmus JH, Chandran K, McLellan JS. High-resolution in situ structures of hantavirus glycoprotein tetramers. Cell. 2026 Apr 30;189(9):2731-2747.e15.
  2. pdb_00006zjm: Serris A, Stass R, Bignon EA, Muena NA, Manuguerra JC, Jangra RK, Li S, Chandran K, Tischler ND, Huiskonen JT, Rey FA, Guardado-Calvo P. The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism. Cell. 2020 Oct 15;183(2):442-456.e16.
  3. pdb_00007qqb: Mittler E, Serris A, Esterman ES, Florez C, Polanco LC, O'Brien CM, Slough MM, Tynell J, Gröning R, Sun Y, Abelson DM, Wec AZ, Haslwanter D, Keller M, Ye C, Bakken RR, Jangra RK, Dye JM, Ahlm C, Rappazzo CG, Ulrich RG, Zeitlin L, Geoghegan JC, Bradfute SB, Sidoli S, Forsell MNE, Strandin T, Rey FA, Herbert AS, Walker LM, Chandran K, Guardado-Calvo P. Structural and mechanistic basis of neutralization by a pan-hantavirus protective antibody. Sci Transl Med. 2023 Jun 14;15(700):eadg1855.
  4. pdb_00005j81: Willensky S, Bar-Rogovsky H, Bignon EA, Tischler ND, Modis Y, Dessau M. Crystal Structure of Glycoprotein C from a Hantavirus in the Post-fusion Conformation. PLoS Pathog. 2016 Oct 26;12(10):e1005948.
  5. Mittler E, Wec AZ, Tynell J, Guardado-Calvo P, Wigren-Byström J, Polanco LC, O'Brien CM, Slough MM, Abelson DM, Serris A, Sakharkar M, Pehau-Arnaudet G, Bakken RR, Geoghegan JC, Jangra RK, Keller M, Zeitlin L, Vapalahti O, Ulrich RG, Bornholdt ZA, Ahlm C, Rey FA, Dye JM, Bradfute SB, Strandin T, Herbert AS, Forsell MNE, Walker LM, Chandran K. Human antibody recognizing a quaternary epitope in the Puumala virus glycoprotein provides broad protection against orthohantaviruses. Sci Transl Med. 2022 Mar 16;14(636):eabl5399.
  6. Guardado-Calvo P, Bignon EA, Stettner E, Jeffers SA, Pérez-Vargas J, Pehau-Arnaudet G, Tortorici MA, Jestin JL, England P, Tischler ND, Rey FA. Mechanistic Insight into Bunyavirus-Induced Membrane Fusion from Structure-Function Analyses of the Hantavirus Envelope Glycoprotein Gc. PLoS Pathog. 2016 Oct 26;12(10):e1005813.

July 2026, Janet Iwasa

http://doi.org/10.2210/rcsb_pdb/mom_2026_7
About Molecule of the Month
The Molecule of the Month series presents short accounts on selected topics from the Protein Data Bank. Each installment includes an introduction to the structure and function of the molecule, a discussion of the relevance of the molecule to human health and welfare, and suggestions for how visitors might view these structures and access further details. The series is currently created by Janet Iwasa (University of Utah).